The energetic folks at the Public Library of Science (PLoS) have launched a new Open Access (OA) journal, called PLoS ONE and is described on the publisher’s web site in this fashion: a high-volume, efficient and economical system for the publication of peer-reviewed research in all areas of science and medicine. It will provide a unique forum for community dialogue using the full potential of the web to accelerate scientific progress. The idea seems to be to streamline acceptance, review, publication and peer reaction, by concentrating these functions at one point, and using the speed of electronic processes as much as possible. The published paper becomes available for immediate inspection and commentary by those readers who want to ask questions, suggest modifications or interpretations and point out areas for further elaboration. Plos ONE’s web site calls this starting a conversation, and also refers to the process as open peer review. Speeding up the publication process is one of the project’s main goals, and PLoS ONE is shooting for a 10-14 day turn-around from submission to publication. Read more:
PLoS ONE
By the way, PLoS has a good blog, divided into two sub-blogs, one each on publishing and information technology:
Blog
Monthly Archives: August 2006
The Dreadful Knife
The Blogging Grouch yields to no man or woman in kvetching and griping about how everything stinks nowadays. So, it was a shock to stumble on a review of Thomas Dormandy’s The Worst of Evils; the fight against pain, and be reminded of one tremendous benefit moderns like us enjoy, that being the relative freedom from pain, especially during surgery. In all the many thousands of years homo sapiens has been hopping around, he has been hurting, badly in fact, for much of that time. Surgical operations added a special horror, since they were intended to do good, but differed little from the work of torturers or executioners as far as the subject experience of the operatee was concerned. Those scenes from Gone With the Wind at the Atlanta railroad station were hammed up and played for effects on the screen, but they were not very far removed from reality either. The effective banishment of pain from surgery, and increasingly, from much of ordinary existence, dates only from the middle of the Nineteenth century. That’s worth thinking about, and worth a small expression of gratitude at not having to put up with the terrors that plagued our not so distant ancestors. Charles V had an empire that stretched around the globe, and wealth beyond counting. But he didn’t have aspirin, the consolations of coffee or tea, or any way of battling the insomnia that tormented him. This is an oft-told tale, but it’s useful to hear it again. We’re pretty lucky. Ok, so there’s no Mozart around, and much of our “kultcha” is trashy and cheap. But, we don’t have to worry about the dreadful knife, because we’ll be out cold and not feel a thing. Hallelujah!
The Worst of Evils: The Fight Against Pain
by Thomas Dormandy
547pp, Yale
Open Source Research
An interesting paper in the Australian Journal of Chemistry raises the topic of open source research. Paralleling the emergence of open source software creation in the computer industry, the authors suggest that a similar model could work very well in science, and in biomedical research especially. In the software creation process, results are made available to all in the professional “community”, defined as those who are able to understand and advance the product. Results are posted very quickly, bad ideas are dropped. Online collaboration tends to foster quicker progress. In the research environment, open source methods and philosophy might bring about similar advantages. The authors are careful to note that not all the tools needed are in place, but as online methods improve in both power and speed, open source research will gather momentum.
Kepler TB et al. Open Source Research-the Power of Us Australian Journal of Chemistry 2006, 59(5) 291-4
Let’s Go to the Museum.
Ok, let’s. A lot of people in the USA do just that. How many? double the number of those who attend sporting events of all types, combined! Wait a sec, you mean twice as many Americans visit museums than all those who attend any kind of ballgame, match, contest, etc, any and all, total? Apparently so. People in the USA love museums. They visit museums and they start a lot of new ones. In the Seventies and Eighties, the High Middle Ages of Museum-dom in America, a new museum opened on average every other day. I guess a lot of them fold, but still, you have to wonder. Two days after the 9.11 attacks, the MOMA re-opened and close to 10,000 visitors entered the place, seeking something they couldn’t get elsewhere. Big Ticket architects love museums as opportunities to make “statements”. For a country that’s supposed to be and, honestly, often is, crass, crude, rude, bumptious, uncultivated, boorish and tending into the outright slobby, this is all rather puzzling. It must give our European friends much to mull over as they sip their expressos and pernods. It occupied one person over here quite intensely also. Marjorie Schwartzer is professor of museum studies, and she has written: Riches, Rivals&Radicals: 100 years of museums in America. The Seatle Times reviewer called it enlightening, satisfying and funny. Funny? This is getting strange. A funny book about museums? Think about it, though. Mix up politicians, artists, donors, architects,building contractors, cultural critics, citizens’ groups with axes to grind. The comic possibilities are endless
Museums
Wikipedia in the News
Wikipedia is back on page one, or thereabouts. The Atlantic Monthly has a long article on how the WP got that way, with quite a lot of background on the persons and personalities involved and the sometimes rather juvenile squabbles that surround article writing and editing. Colbert, on the Colbert Report fired a couple of clips at the WP, especially the “anyone can write or edit anything” philosophy underlying the project, and the ‘consensus theory’ of truth. Crudely put, using Colbert’s example, if enough people come to the view that the number of African elephants is increasing, that position becomes the ‘true’ one. The Atlantic Monthly piece is less polemical and does a better job at the historical background of the Wikipedia. One thing the Blogging Grouch has noticed is that WP collaborators in other countries don’t seem to be gripped by the same ideological frenzy that animates, if that’s the word, so many US writers. They just seem to be going about the task of writing a public and free encyclopedia. They also seem to write less about the history of the Klingons and Vulcans. That’s just an impression. Confirming it would take a lot of “research”… although it might be kind of fun to see how many German articles there are about Klingonia or whatever the place is called. Rubes like the BG have been taken so often by slickers that we tend to regard almost everything as a ripoff. Right now, WP is very much in the “prove it to me” category, all the bloviating to the contrary notwithstanding.
Hollywood Physics
It seems we can’t stay away from the movies. But, the temptations in our path are stong ones. For instance, there is this article in Physics Web which talks about the way physicists come over on the Big Screen, and the BG couldn’t resist. Sidney Perkowitz of Emory University has done the world a service by screening over 60 films which depict physicists or people very much like them, to see how well or badly the Moguls handled the science part. Perkowitz is an easy grader, but even so there are some flicks so dismissive or so uninformed about the science part of the story that they deserve a crack of the whip. On almost the last rung we find The Core, a turkey about the inner core of the earth ceasing to rotate and how a team of courageous physicists build an earth boring device, made of some substance that gets stronger with heat…a property which will come in handy since the core is, like, really, really hot. Well, they drill down there and restart the core with some nuclear explosive devices they brought along. Pu-leeze! Perkowitz is also pretty tough on What the Bleep Do We Know, an atrocity that played in art houses a couple of years ago. It’s a mish mash of words and phrases drawn from quantum physics and fantasies drawn from who knows where. On the other hand, he gives high marks for scientific accuracy to Destination Moon and Dante’s Peak. The BG saw Moon when he was just a callow youth, and if memory does not deceive, the science part was played pretty straight. There was a cartoon sequence in which Woody Woodpecker explaimed Newton’s Third Law (I’m not making this up). And the moon shot depicted was a Direct Ascent…from Earth, or Oith as they say in Brooklyn to the lunar surface. This approach was ruled out by von Braun and his Teutons in favor of the Lunar Module . The Grouch didn’t see Dante’s Peak . Wasn’t that the one about Seattle, or someplace like that? Dr. P also brings up the fact that the scientists appearing in these epics are not only more than usually brave, clever, prudent and generally virtuous. They are all, all amazingly good looking. Walk through the Physics building on any campus and see if you can match up the shuffling denizens on parade there with their cinematic opposite numbers. Come to think of it, try it at any ballgame, bus stop or subway station. Reality intrudes.
Hollywood Physics
You get a little bonus, in that looking at the article leads you to some nice web sites at the bottom of the page. Enjoy!
Anybody Got a Good Analogy?
Using one thing you know pretty well to help explain another thing that you don’t know quite so well involves analogy. The estimable Toronto Star has a nice article by freelancer Siobhan Roberts on the varous uses of analogy in mathematics and science, particularly physics. The article is well done, and incorporates suggestions for further reading. Ms. Roberts has done her homework and is thoroughly prepared for the exams. She offers some testimony from leading scientists about the way finding and framing good analogies serves as a guide to understanding more deeply the implications of what we know and as a guide to further discovery. Part of the trick, indeed a major part, is coming up with a useful analogy to begin with, and a sign that a discipline is in some kind of theoretical muddle can be that either there is no useful analogy, or that they abound, with each practitioner or researcher coming up with personal favorites. Picking among the candidates is part of the groping forward process. It’s also important to recognize the point at which the analogy breaks down and is no longer useful. Read it with a pencil handy to jot down the authors and titles.
Analogy
PS. I’m using the link from Arts and Letters Daily. Look in the right hand column Essays and Opinion.
Micro/Immunology Journal Backfiles
UTSYSTEM announces the system-wide availability of journal backfiles in Science Direct’s (i.e. Elsevier’s) Microbiology and Immunology collection:
Science Direct Immunology and Microbiology backfiles (73 journal titles)
Science in Iran
So, you think you got troubles! Grant deadlines, lab equipment down, and the elevator in your building is on the fritz, again! Yeah, Yeah, tell all that to people trying to do research in Iran. They’ll laugh in your face. Science published an article on how things are going over there for scientists. It seems that one of the bigger problems is divining which groups are influential at the moment and what their agendas are. Not much different from Bethesda, actually. But it gets a lot dicier. Misreading the signals here can mean your grant gets rejected. Over there, it can mean a nice spell in the slammer, or worse. The clerical regime, on the one hand, is willing to back research that will lead to technical advances, prosperity and power. In fact there is an ambitious 20 year program to upgrade the country’s scientific infrastructure. But they don’t want to back anything that has, or could have, or could be suspected to have theological implications or could challenge the current interpretation of the scriptures. So, researchers and academic administrators have to watch where they put their feet. Some disciplines have a rougher row to hoe than others. The religious authorities ignore petroleum geology and and Double E, but people working in psychology, the neurosciences and especially sociology have to guard their words quite carefully. Sociology? Well, it seems that somebody started wondering if theocracy is actually very effective way to organize society and got into trouble for it. So, sociologists are under the regime’s watchful glance. It all sounds a bit strange to our ears. But it wasn’t all that many years ago when many of the same constraints were in force here, either officially and legally, or as part of the general “kultcha”. And there are probably quite a few who think those were the Good Old Days and wouldn’t mind having them back. It’s the “deja vu all over again” that Yogi Bera talked about.
Iranian Science
Annoying Brits.
Let’s be honest. The British can be a real pain. All that talent, that energy, that reforming zeal can be very intimidating, especially to underachieving colonials whose main task in life is learning to be “comfortable” with their situation, and burnishing their “self esteem”. The high point of that annoying excellence was the 19th century, when some kind of remarkable Brit seemed to pop up behind every tree trunk . How did they accomplish so much? Who told them to do all that stuff, like end the slave trade, figure out evolution, come up with atomic theory, the equations describing electro-magnetism, the Oxford English Dictionary, and the rest of it? It’s enough to make the rest of us feel like a bunch of Homer Simpsons living on a diet of Stupid Pills, washed down by Laziness Elixer. Two of these annoying Brits are the subjects of recent biographies. One of them is Thomas Young and the other is William Plimsoll. Young was a hands-down prodigy, who did a lot of things and was good at most of them. His biographer styles him “the last man who knew everything”. That’s good marketing lingo, but it’s also pretty close to the mark. Young’s range of interest was very great, from optics to linguisitics. City planning, public works, naval architecture, several branches of math, color theory and the physiology of the eye were other areas where he touched down and made genuine contributions. Naturally, he knew several languages surpassingly well, which was not at all unusual for that time and social class, but which strikes us today as astonishing, almost supernatural, so dully monolingual have we become. What made Young tick, and what kind of a man was he, apart from being frighteningly smart? The reviewer in American Scientist thinks this side doesn’t come out too well, or at least seems to be saying that. But the brilliance was the man.
Plimsoll is a different case. He was famous in Victorian England, but is virtually unknown today, except among sailors and marine engineers, because of the Plimsoll marks each ship carries, to indicate the maximum depth a loaded vessel can safely attain . Back then, many cargo ships went to sea in poor condition and greatly overloaded. If the tub made it, the owners were happy. If the tub sank, and the sailors drowned, well, the owners were insured, so for them it was gravy either way. Plimsoll used his position in Parliament and his increasing fame as scourge of social injustices to back his causes which also included mine safety. He was an inventor, in a small way, coming up with a pocket umbrella (something you can really use in England) and a method of straining out impurities from beer. Ya gotta love a guy like that. He was so well known in his time that popular songs were written about him. He hated injustice, and fought it when he could as hard as he could. Today, he’d probably be in every government database with the label, “dangerous radical”. But, despite it all, he seems to have been a merry sort. An interesting guy, or rather, bloke.
Plimsoll
Young